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Identifier Index
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_
]
C
C
(in
Bio.Nexus.Nexus
)
classdict
(in
Bio.Restriction._Update.RestrictionCompiler
)
complement()
(in
Seq
)
c_
(in
Bio.Affy.CelFile
)
classify()
(in
Bio.LogisticRegression
)
complement()
(in
UnknownSeq
)
c_
(in
Bio.distance
)
classify()
(in
Bio.MaxEntropy
)
complement_alphabet
(in
Bio.Restriction._Update.RestrictionCompiler
)
ca_depth()
(in
Bio.PDB.ResidueDepth'
)
classify()
(in
Bio.NaiveBayes
)
Compound
(in
Bio.KEGG
)
Cache
(in
Bio.PopGen.SimCoal
)
classify()
(in
Bio.kNN
)
conj
(in
Bio.Affy.CelFile
)
cai_for_gene()
(in
CodonAdaptationIndex
)
clean()
(in
AlignmentWriter
)
conj
(in
Bio.distance
)
calc_affine_penalty()
(in
Bio.pairwise2
)
clean()
(in
SequenceWriter
)
conjugate
(in
Bio.Affy.CelFile
)
calc_allele_genotype_freqs()
(in
GenePopController
)
clean_value()
(in
FeatureValueCleaner
)
conjugate
(in
Bio.distance
)
calc_angle()
(in
Bio.PDB.Vector'
)
clear()
(in
Crystal
)
connection
(in
Bio.DocSQL
)
calc_dihedral()
(in
Bio.PDB.Vector'
)
clear()
(in
NCBIDictionary
)
Connection
(in
Bio.GFF
)
calc_diversities_fis_with_identity()
(in
GenePopController
)
clear()
(in
_InMemoryIndex
)
ConnectionError
(in
Bio.Restriction._Update.Update
)
calc_diversities_fis_with_size()
(in
GenePopController
)
clear()
(in
Dictionary
)
consensus()
(in
Motif
)
calc_fst_all()
(in
GenePopController
)
clear()
(in
_IndexedSeqFileDict
)
consensus()
(in
Bio.Nexus.Trees
)
calc_fst_pair()
(in
GenePopController
)
CLIP
(in
Bio.Affy.CelFile
)
ConsoleWidth
(in
PrintFormat
)
calc_ibd()
(in
EasyController
)
CLIP
(in
Bio.distance
)
ConsoleWidth
(in
Bio.Restriction.RanaConfig
)
calc_ibd_diplo()
(in
GenePopController
)
close()
(in
FilteredReader
)
consrtm()
(in
_FeatureConsumer
)
calc_ibd_haplo()
(in
GenePopController
)
close()
(in
Adaptor
)
consrtm()
(in
_RecordConsumer
)
calc_rho_all()
(in
GenePopController
)
close()
(in
DBServer
)
constant()
(in
Nexus
)
calc_rho_pair()
(in
GenePopController
)
ClustalAlignment
(in
Bio.Clustalw
)
contains()
(in
Alphabet
)
calculate()
(in
Bio.LogisticRegression
)
ClustalIO
(in
Bio.AlignIO
)
contains()
(in
AlphabetEncoder
)
calculate()
(in
Bio.MaxEntropy
)
ClustalIterator
(in
Bio.AlignIO.ClustalIO
)
contains()
(in
Gapped
)
calculate()
(in
Bio.NaiveBayes
)
Clustalw
(in
Bio
)
contains()
(in
HasStopCodon
)
calculate()
(in
Bio.kNN
)
ClustalwCommandline
(in
Bio.Align.Applications._Clustalw
)
contains()
(in
HashSet
)
calculate_fitness()
(in
DifferentialSchemaFitness
)
ClustalWriter
(in
Bio.AlignIO.ClustalIO
)
ContentHandler
(in
Bio.ExPASy.ScanProsite
)
calculate_fitness()
(in
MostCountSchemaFitness
)
Cluster
(in
Bio
)
contents()
(in
Bio.listfns
)
calculate_relative_entropy()
(in
LogOddsMatrix
)
clustercentroids()
(in
Record
)
Contig
(in
Bio.Sequencing.Ace
)
calculate_relative_entropy()
(in
SubstitutionMatrix
)
clusterdistance()
(in
Record
)
contig_location()
(in
_FeatureConsumer
)
canvas_angle()
(in
CircularDrawer
)
Cmodulo
(in
PrintFormat
)
contig_location()
(in
_RecordConsumer
)
canvas_location()
(in
LinearDrawer
)
cmp_sccs()
(in
Bio.SCOP
)
Controller
(in
Bio.PopGen.FDist
)
CaPPBuilder
(in
Bio.PDB.Polypeptide
)
CodonAdaptationIndex
(in
Bio.SeqUtils.CodonUsage
)
Controller
(in
Bio.PopGen.GenePop
)
CAPS
(in
Bio
)
CODONPOSITIONS
(in
Bio.Nexus.Nexus
)
Controller
(in
Bio.PopGen.SimCoal
)
CAPSMap
(in
Bio.CAPS
)
CodonsDict
(in
Bio.SeqUtils.CodonUsage
)
converged()
(in
_DescriptionConsumer
)
cartesian()
(in
HashSet
)
CodonTable
(in
Bio.Data
)
ConversionMutation
(in
Bio.GA.Mutation.Simple
)
cast
(in
Bio.Affy.CelFile
)
CodonTable
(in
Bio.Data.CodonTable
)
convert()
(in
Bio.AlignIO
)
cast
(in
Bio.distance
)
CodonUsage
(in
Bio.SeqUtils
)
convert()
(in
Bio.SeqIO
)
catalyse()
(in
Blunt
)
CodonUsageIndices
(in
Bio.SeqUtils
)
convert_absolute_support()
(in
Tree
)
catalyse()
(in
Ov3
)
cofactor()
(in
_RecordConsumer
)
convert_genepop_to_fdist()
(in
Bio.PopGen.FDist.Utils
)
catalyse()
(in
Ov5
)
collapse()
(in
Chain
)
copy()
(in
Crystal
)
catalyse()
(in
Unknown
)
collapse_genera()
(in
Tree
)
copy()
(in
Organism
)
catalytic_activity()
(in
_RecordConsumer
)
collectRules()
(in
GenericParser
)
copy()
(in
NCBIDictionary
)
ceil
(in
Bio.Affy.CelFile
)
ColorTranslator
(in
Bio.Graphics.GenomeDiagram._Colors
)
copy()
(in
Vector
)
ceil
(in
Bio.distance
)
Cols()
(in
CelConsumer
)
copy()
(in
PrositeTerm
)
CelConsumer
(in
Bio.Affy.CelFile
)
ColumnUnit
(in
Bio.Wise.psw
)
copy()
(in
Dictionary
)
CelFile
(in
Bio.Affy
)
combine()
(in
Bio.Nexus.Nexus
)
copy()
(in
_IndexedSeqFileDict
)
CelParser
(in
Bio.Affy.CelFile
)
command_line()
(in
AlignAceConsumer
)
cos
(in
Bio.Affy.CelFile
)
CelRecord
(in
Bio.Affy.CelFile
)
command_line()
(in
AlignAceConsumer
)
cos
(in
Bio.distance
)
CelScanner
(in
Bio.Affy.CelFile
)
Commandline
(in
Bio.Nexus.Nexus
)
cosh
(in
Bio.Affy.CelFile
)
centre
(in
GraphData
)
comment()
(in
_RecordConsumer
)
cosh
(in
Bio.distance
)
Chain
(in
Bio.Crystal
)
comment()
(in
_FeatureConsumer
)
COUNT
(in
Bio.SubsMat.FreqTable
)
Chain
(in
Bio.Nexus.Nodes
)
comment()
(in
_RecordConsumer
)
count()
(in
Chain
)
Chain
(in
Bio.PDB
)
comment()
(in
_RecordConsumer
)
count()
(in
PatternRepository
)
Chain
(in
Bio.PDB.Chain
)
comment()
(in
_RecordConsumer
)
count()
(in
MutableSeq
)
chain_id
(in
align
)
comment()
(in
_RecordConsumer
)
count()
(in
Seq
)
ChainException
(in
Bio.Nexus.Nodes
)
comment()
(in
_SequenceConsumer
)
count()
(in
UnknownSeq
)
ChainSelector
(in
Bio.PDB.Dice
)
Commercially_available
(in
Bio.Restriction.Restriction
)
count()
(in
Bio.listfns
)
change()
(in
Analysis
)
commit()
(in
Adaptor
)
count_amino_acids()
(in
ProteinAnalysis
)
characteristic()
(in
NoCut
)
commit()
(in
DBServer
)
count_monomers()
(in
Bio.utils
)
characteristic()
(in
OneCut
)
common_ancestor()
(in
Tree
)
count_terminals()
(in
Tree
)
characteristic()
(in
TwoCuts
)
CommOnly
(in
Bio.Restriction.Restriction
)
crc32()
(in
Bio.SeqUtils.CheckSum
)
characters()
(in
_XMLparser
)
Comparative
(in
Bio.Graphics
)
crc64()
(in
Bio.SeqUtils.CheckSum
)
characters()
(in
DataHandler
)
ComparativeScatterPlot
(in
Bio.Graphics.Comparative
)
Create
(in
Bio.DocSQL
)
characters()
(in
ContentHandler
)
compare_motifs()
(in
MEMEMotif
)
create_contingency_tables()
(in
GenePopController
)
characters()
(in
EventGenerator
)
CompareAce()
(in
Bio.AlignAce.CompareAceStandalone
)
CreateDict
(in
Bio.PropertyManager
)
CharBuffer
(in
Bio.Nexus.Nexus
)
CompareAceCommandline
(in
Bio.AlignAce.Applications
)
crop_matrix()
(in
Nexus
)
charged_aas
(in
Bio.SeqUtils.IsoelectricPoint
)
CompareAceCommandline
(in
Bio.Motif.Applications._AlignAce
)
Crossover
(in
Bio.GA
)
CHARSET
(in
Bio.Nexus.Nexus
)
CompareAceConsumer
(in
Bio.AlignAce.Parser
)
Crystal
(in
Bio
)
CheckSum
(in
Bio.SeqUtils
)
CompareAceConsumer
(in
Bio.Motif.Parsers.AlignAce
)
Crystal
(in
Bio.Crystal
)
child_edges()
(in
Graph
)
CompareAceParser
(in
Bio.AlignAce.Parser
)
CrystalError
(in
Bio.Crystal
)
child_edges()
(in
MultiGraph
)
CompareAceParser
(in
Bio.Motif.Parsers.AlignAce
)
cstatus()
(in
Nexus
)
children()
(in
Graph
)
CompareAceScanner
(in
Bio.AlignAce.Scanner
)
ct
(in
Bio.Sequencing.Ace
)
children()
(in
MultiGraph
)
CompareAceScanner
(in
Bio.Motif.Parsers.AlignAce
)
current_suppliers()
(in
RestrictionBatch
)
Chromosome
(in
Bio.Graphics.BasicChromosome
)
CompareAceStandalone
(in
Bio.AlignAce
)
cursor()
(in
Query
)
CHROMOSOME()
(in
_RecordConsumer
)
Compass
(in
Bio
)
cursor()
(in
QuerySingle
)
ChromosomeCounts
(in
Bio.Graphics.DisplayRepresentation
)
compatible_end()
(in
Blunt
)
cut_once()
(in
NoCut
)
ChromosomeSegment
(in
Bio.Graphics.BasicChromosome
)
compatible_end()
(in
Ov3
)
cut_once()
(in
OneCut
)
CircularDrawer
(in
Bio.Graphics.GenomeDiagram._CircularDrawer
)
compatible_end()
(in
Ov5
)
cut_once()
(in
TwoCuts
)
circularise()
(in
FormattedSeq
)
compatible_end()
(in
Unknown
)
cut_twice()
(in
NoCut
)
CKEYWORDS
(in
Bio.Sequencing.Phd
)
compile()
(in
Bio.Prosite.Pattern
)
cut_twice()
(in
OneCut
)
Cla
(in
Bio.SCOP
)
complement()
(in
MutableSeq
)
cut_twice()
(in
TwoCuts
)
Trees
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