Trees
Indices
Help
[
hide private
]
[
frames
] |
no frames
]
Identifier Index
[
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
_
]
G
GA
(in
Bio
)
get()
(in
DBObject
)
get_seq_by_num()
(in
Alignment
)
gap_consensus()
(in
SummaryInfo
)
get()
(in
Registry
)
get_Seq_by_primary_id()
(in
BioSeqDatabase
)
gap_penalties()
(in
_ParametersConsumer
)
get()
(in
MartelAttributeList
)
get_Seq_by_ver()
(in
BioSeqDatabase
)
gap_penalties_stats
(in
Bio.expressions.blast.ncbiblast
)
get()
(in
Tokenizer
)
get_seqres_file()
(in
PDBList
)
gap_trigger()
(in
_ParametersConsumer
)
get_alignment_length()
(in
Alignment
)
get_Seqs_by_acc()
(in
BioSeqDatabase
)
gap_x_dropoff()
(in
_ParametersConsumer
)
get_all()
(in
PatternRepository
)
get_sequence()
(in
Polypeptide
)
gap_x_dropoff_final()
(in
_ParametersConsumer
)
get_all()
(in
Biblio
)
get_serial_number()
(in
Atom
)
gaponly()
(in
Nexus
)
get_all()
(in
BiblioCollection
)
get_sigatm()
(in
Atom
)
Gapped
get_all_entries()
(in
PDBList
)
get_siguij()
(in
Atom
)
gapped()
(in
_DatabaseReportConsumer
)
get_all_ids()
(in
Biblio
)
get_sourcefile()
(in
Bio.EUtils.sourcegen
)
gapped_lambda_stats
(in
Bio.expressions.blast.ncbiblast
)
get_all_ids()
(in
BiblioCollection
)
get_sprot_raw()
(in
Bio.ExPASy
)
GB_BASE_INDENT
(in
Record
)
get_all_obsolete()
(in
PDBList
)
get_sprot_raw()
(in
Bio.WWW.ExPASy
)
GB_FEATURE_INDENT
(in
Record
)
get_all_primary_ids()
(in
BioSeqDatabase
)
get_start_end()
(in
Bio.Nexus.Nexus
)
GB_FEATURE_INTERNAL_INDENT
(in
Record
)
get_all_seqs()
(in
Alignment
)
get_status_list()
(in
PDBList
)
gb_genome
(in
Bio.dbdefs.genbank
)
get_all_urls()
(in
NetCatch
)
get_step_2d()
(in
Bio.PopGen.SimCoal.Template
)
GB_INTERNAL_INDENT
(in
Record
)
get_all_values()
(in
Biblio
)
get_structure()
(in
MMCIFParser
)
GB_LINE_LENGTH
(in
Record
)
get_altloc()
(in
Atom
)
get_structure()
(in
PDBParser
)
gb_nucleotide
(in
Bio.dbdefs.genbank
)
get_amino_acids_percent()
(in
ProteinAnalysis
)
get_structure()
(in
StructureBuilder
)
GB_OTHER_INTERNAL_INDENT
(in
Record
)
get_anisou()
(in
Atom
)
get_subseq_as_string()
(in
Adaptor
)
gb_protein
(in
Bio.dbdefs.genbank
)
get_array()
(in
Vector
)
get_succ()
(in
Node
)
GB_SEQUENCE_INDENT
(in
Record
)
get_as()
(in
DBGroup
)
get_supported_features()
(in
DispatchHandler
)
GC()
(in
Bio.SeqUtils
)
get_as()
(in
DBObject
)
get_surface()
(in
Bio.PDB.ResidueDepth'
)
GC123()
(in
Bio.SeqUtils
)
get_atoms()
(in
Chain
)
get_tau_list()
(in
Polypeptide
)
GC_Frame()
(in
Bio.SeqUtils
)
get_atoms()
(in
Model
)
get_taxa()
(in
Tree
)
GC_skew()
(in
Bio.SeqUtils
)
get_atoms()
(in
Structure
)
get_terminals()
(in
Tree
)
gcg()
(in
Bio.SeqUtils.CheckSum
)
get_attribute()
(in
ElementNode
)
get_text()
(in
Comment
)
gen_iterator()
(in
Martel.test.test_IterParser
)
get_attribute()
(in
ClassHolder
)
get_text()
(in
IndentedText
)
GenBank
(in
Bio
)
get_attribute()
(in
FunctionHolder
)
get_text()
(in
LocusLinkParser
)
genbank
(in
Bio.dbdefs
)
get_bfactor()
(in
Atom
)
get_theta_list()
(in
Polypeptide
)
genbank
(in
Bio.expressions
)
get_blank_emissions()
(in
HiddenMarkovModel
)
get_top()
(in
PatternRepository
)
genbank
(in
Bio.formatdefs
)
get_blank_transitions()
(in
HiddenMarkovModel
)
get_top_percentage()
(in
PatternRepository
)
genbank
(in
Bio.formatdefs.genbank
)
get_builder()
(in
BaseSeqRecordIndexer
)
get_trailer()
(in
PDBParser
)
GENBANK_INDENT
(in
Bio.GenBank
)
get_by_id()
(in
Biblio
)
get_transformed()
(in
SVDSuperimposer
)
genbank_records
(in
Bio.formatdefs.genbank
)
get_ca_list()
(in
Polypeptide
)
get_unique_parents()
(in
Bio.PDB.Selection
)
genbank_release
(in
Bio.formatdefs.genbank
)
get_chains()
(in
Structure
)
get_unpacked_list()
(in
Chain
)
GENBANK_SPACER
(in
Bio.GenBank
)
get_characters()
(in
DispatchHandler
)
get_unpacked_list()
(in
Residue
)
GenBankCdsFeatureIterator()
(in
Bio.SeqIO.InsdcIO
)
get_characters()
(in
Dispatcher
)
get_urls_by_index()
(in
NetCatch
)
GenBankIterator()
(in
Bio.SeqIO.InsdcIO
)
get_children()
(in
ElementNode
)
get_urls_by_label()
(in
NetCatch
)
GenBankScanner
(in
Bio.GenBank.Scanner
)
get_chr_template()
(in
Bio.PopGen.SimCoal.Template
)
get_urls_by_range()
(in
NetCatch
)
genBlank()
(in
SourceGen
)
get_collection_id()
(in
BiblioCollection
)
get_vector()
(in
Atom
)
genClass()
(in
SourceGen
)
get_column()
(in
SummaryInfo
)
get_vocabulary_names()
(in
Biblio
)
genClass()
(in
Bio.EUtils.sourcegen
)
get_column()
(in
Alignment
)
get_xy_from_matrix()
(in
Bio.PopGen.SimCoal.Template
)
genComment()
(in
SourceGen
)
get_coord()
(in
Atom
)
getall()
(in
_BaseMultiDict
)
genComment()
(in
Bio.EUtils.sourcegen
)
get_coords()
(in
Fragment
)
getall()
(in
ElementNode
)
Gene
(in
Bio.NeuralNetwork
)
get_count()
(in
KDTree
)
getAscendent()
(in
Node
)
GENE()
(in
_RecordConsumer
)
get_count()
(in
Biblio
)
getAscendentFromSQL()
(in
Scop
)
GENE_ID()
(in
_RecordConsumer
)
get_count()
(in
BiblioCollection
)
getAstralDomainsFromFile()
(in
Astral
)
gene_name()
(in
_RecordConsumer
)
get_data()
(in
Node
)
getAstralDomainsFromSQL()
(in
Astral
)
gene_name()
(in
_SequenceConsumer
)
get_dbutils()
(in
BioSQL.DBUtils
)
getAtoms()
(in
SeqMap
)
gene_symbol()
(in
_RecordConsumer
)
get_demography_template()
(in
Bio.PopGen.SimCoal.Template
)
getblock()
(in
DictionaryBuilder
)
GenePop
(in
Bio.PopGen
)
get_differing()
(in
PatternRepository
)
getChildren()
(in
Node
)
General
(in
Bio.GA.Crossover
)
get_document()
(in
POMDocument
)
getDescendents()
(in
Node
)
General
(in
Bio.GA.Mutation
)
get_element()
(in
ElementNode
)
getDescendentsFromSQL()
(in
Scop
)
GeneralPoint
(in
Bio.GA.Crossover
)
get_element()
(in
Martel.test.test_attrs
)
getDomainBySid()
(in
Scop
)
GeneralPointCrossover
(in
Bio.GA.Crossover.GeneralPoint
)
get_entry()
(in
Bio.ECell.Record
)
getDomainFromSQL()
(in
Scop
)
Generate
(in
Martel
)
get_entry()
(in
BisectFile
)
getDomains()
(in
Scop
)
generate()
(in
Martel.Generate
)
get_entry_description()
(in
Biblio
)
GetErrorPos
(in
Martel.test.test_optimize
)
generate_alt()
(in
Martel.Generate
)
get_error()
(in
OutputLayer
)
getfiles()
(in
RebaseUpdate
)
generate_any()
(in
Martel.Generate
)
get_escape_length()
(in
IndentedText
)
getLength()
(in
MartelAttributeList
)
generate_assert()
(in
Martel.Generate
)
get_file()
(in
DirectoryRetriever
)
getName()
(in
MartelAttributeList
)
generate_at_beginning()
(in
Martel.Generate
)
get_file()
(in
FileRetriever
)
getnode()
(in
POMDocument
)
generate_at_end()
(in
Martel.Generate
)
get_File_list()
(in
FileRetriever
)
getNodeBySunid()
(in
Scop
)
generate_debug()
(in
Martel.Generate
)
get_full_id()
(in
Atom
)
GetObject
(in
Bio.EUtils.parse
)
generate_dot()
(in
Martel.Generate
)
get_full_id()
(in
Entity
)
getParent()
(in
Node
)
generate_eol()
(in
Martel.Generate
)
get_fullname()
(in
Atom
)
getRoot()
(in
Scop
)
generate_group()
(in
Martel.Generate
)
get_generator()
(in
Bio.EUtils.sourcegen
)
getSeq()
(in
Astral
)
generate_groupref()
(in
Martel.Generate
)
get_header()
(in
PDBParser
)
getSeqBySid()
(in
Astral
)
generate_index()
(in
CodonAdaptationIndex
)
get_id()
(in
Node
)
getSeqMap()
(in
SeqMapIndex
)
generate_island_mat()
(in
Bio.PopGen.SimCoal.Template
)
get_id()
(in
Atom
)
getSimulation()
(in
SimCoalCache
)
generate_join_events()
(in
Bio.PopGen.SimCoal.Template
)
get_id()
(in
DisorderedEntityWrapper
)
gettype()
(in
DatabaseDict
)
generate_literal()
(in
Martel.Generate
)
get_id()
(in
Entity
)
getType()
(in
MartelAttributeList
)
generate_max_repeat()
(in
Martel.Generate
)
get_id()
(in
Fragment
)
getValue()
(in
MartelAttributeList
)
generate_model()
(in
Bio.PopGen.SimCoal.Template
)
get_id_dictionary()
(in
BaseSeqRecordIndexer
)
getwidth()
(in
SubPattern
)
generate_named_max_repeat()
(in
Martel.Generate
)
get_id_dictionary()
(in
FunctionIndexer
)
GFF
(in
Bio
)
generate_null_mat()
(in
Bio.PopGen.SimCoal.Template
)
get_id_dictionary()
(in
SimpleIndexer
)
gi
(in
Bio.expressions.genbank
)
generate_null_op()
(in
Martel.Generate
)
get_indices()
(in
KDTree
)
gi()
(in
_FeatureConsumer
)
generate_parser()
(in
Martel.Generate
)
get_indices()
(in
KDTree
)
gi()
(in
_RecordConsumer
)
generate_pass_through()
(in
Martel.Generate
)
get_info()
(in
GrabXPathNodes
)
global_alphabet
(in
Handle_sequence
)
generate_seq()
(in
Martel.Generate
)
get_init_rms()
(in
SVDSuperimposer
)
GN
(in
Bio.expressions.swissprot.sprot38
)
generate_simcoal_from_template()
(in
Bio.PopGen.SimCoal.Template
)
get_instance_by_name()
(in
Motif
)
GN
(in
Martel.test.test_swissprot38
)
generate_ssm2d_mat()
(in
Bio.PopGen.SimCoal.Template
)
get_interpro_entry()
(in
Bio.InterPro
)
GN
(in
Martel.test.testformats.swissprot38
)
generate_str()
(in
Martel.Generate
)
get_iterator()
(in
Entity
)
GN_block
(in
Bio.expressions.swissprot.sprot38
)
generate_table
(in
Martel.Generate
)
get_iterator()
(in
StructureAlignment
)
GN_block
(in
Martel.test.test_swissprot38
)
generate_table
(in
Martel.test.test_Generate
)
get_level()
(in
Atom
)
GN_block
(in
Martel.test.testformats.swissprot38
)
GenerationEvolver
(in
Bio.GA.Evolver
)
get_level()
(in
Entity
)
gnl_id
(in
Bio.expressions.fasta
)
GeneratorState
(in
Martel.Generate
)
get_list()
(in
Entity
)
Gobase
(in
Bio
)
GeneRecord
(in
Bio.Gobase
)
get_maps()
(in
StructureAlignment
)
gonnet
(in
Bio.SubsMat.MatrixInfo
)
Generic
(in
Bio.Align
)
get_markov_model()
(in
MarkovModelBuilder
)
GrabElements
(in
Martel.test.test_attrs
)
generic_alphabet
(in
Bio.Alphabet
)
get_merge_text()
(in
Martel.optimize
)
GrabXPathNodes
(in
Bio.Mindy.XPath
)
generic_by_id
(in
Bio.Data.CodonTable
)
get_more()
(in
Biblio
)
grant
(in
Bio.SubsMat.MatrixInfo
)
generic_by_name
(in
Bio.Data.CodonTable
)
get_motif_by_name()
(in
MASTRecord
)
Graph
(in
Bio.Pathway.Rep
)
Generic_dbutils
(in
BioSQL.DBUtils
)
get_motif_by_name()
(in
MEMERecord
)
Graph
(in
Bio.Pathway.Rep.Graph
)
generic_dna
(in
Bio.Alphabet
)
get_motif_matches()
(in
MASTRecord
)
graph_structure_block
(in
Bio.MetaTool.metatool_format
)
generic_info1
(in
Bio.expressions.blast.ncbiblast
)
get_motif_matches_for_sequence()
(in
MASTRecord
)
graph_structure_heading
(in
Bio.MetaTool.metatool_format
)
generic_info2
(in
Bio.expressions.blast.ncbiblast
)
get_name()
(in
Atom
)
graph_structure_line
(in
Bio.MetaTool.metatool_format
)
generic_nucleotide
(in
Bio.Alphabet
)
get_next()
(in
Biblio
)
Graphics
(in
Bio
)
generic_protein
(in
Bio.Alphabet
)
get_occupancy()
(in
Atom
)
gravy()
(in
ProteinAnalysis
)
generic_rna
(in
Bio.Alphabet
)
get_original_taxon_order()
(in
Nexus
)
greater
(in
Bio.Affy.CelFile
)
generic_run()
(in
Bio.Application
)
get_parent()
(in
ElementNode
)
greater
(in
Bio.LogisticRegression
)
generic_term
(in
Bio.expressions.fasta
)
get_parent()
(in
Atom
)
greater
(in
Bio.MarkovModel
)
generic_transcriber
(in
Bio.Transcribe
)
get_parent()
(in
DisorderedEntityWrapper
)
greater
(in
Bio.MaxEntropy
)
GenericASTBuilder
(in
Bio.Parsers.spark
)
get_parent()
(in
Entity
)
greater
(in
Bio.NaiveBayes
)
GenericASTMatcher
(in
Bio.Parsers.spark
)
get_parser()
(in
POMDocument
)
greater
(in
Bio.Statistics.lowess
)
GenericASTTraversal
(in
Bio.Parsers.spark
)
get_phi_psi_list()
(in
Polypeptide
)
greater
(in
Bio.distance
)
GenericASTTraversalPruningException
(in
Bio.Parsers.spark
)
get_prev()
(in
Node
)
greater
(in
Bio.kNN
)
GenericParser
(in
Bio.Parsers.spark
)
get_PrimarySeq_stream()
(in
BioSeqDatabase
)
greater_equal
(in
Bio.Affy.CelFile
)
GenericScanner
(in
Bio.Parsers.spark
)
get_prodoc_entry()
(in
Bio.ExPASy
)
greater_equal
(in
Bio.LogisticRegression
)
GenericTools
(in
Bio.GFF
)
get_prodoc_entry()
(in
Bio.WWW.ExPASy
)
greater_equal
(in
Bio.MarkovModel
)
genetic
(in
Bio.SubsMat.MatrixInfo
)
get_prosite_entry()
(in
Bio.ExPASy
)
greater_equal
(in
Bio.MaxEntropy
)
GeneticAlgorithmFinder
(in
Bio.NeuralNetwork.Gene.Schema
)
get_prosite_entry()
(in
Bio.WWW.ExPASy
)
greater_equal
(in
Bio.NaiveBayes
)
genFunc()
(in
SourceGen
)
get_prosite_raw()
(in
Bio.ExPASy
)
greater_equal
(in
Bio.Statistics.lowess
)
genFunc()
(in
Bio.EUtils.sourcegen
)
get_prosite_raw()
(in
Bio.WWW.ExPASy
)
greater_equal
(in
Bio.distance
)
genImport()
(in
SourceGen
)
get_query_params()
(in
DateRange
)
greater_equal
(in
Bio.kNN
)
genImport()
(in
Bio.EUtils.sourcegen
)
get_query_params()
(in
WithinNDays
)
Group
(in
Martel.Expression
)
genMethod()
(in
SourceGen
)
get_radii()
(in
KDTree
)
group()
(in
PrositeMatch
)
genMethod()
(in
Bio.EUtils.sourcegen
)
get_radii()
(in
KDTree
)
Group()
(in
Martel
)
genome_genbank_eutils
(in
Bio.dbdefs.genbank
)
get_random()
(in
PatternRepository
)
group_names()
(in
Expression
)
Geo
(in
Bio
)
get_recent_changes()
(in
PDBList
)
group_names()
(in
ExpressionList
)
get()
(in
Crystal
)
get_residue()
(in
PSSM
)
group_names()
(in
Group
)
get()
(in
AmbiguousForwardTable
)
get_residues()
(in
Model
)
group_names()
(in
HeaderFooter
)
get()
(in
_BaseMultiDict
)
get_residues()
(in
Structure
)
group_names()
(in
MaxRepeat
)
get()
(in
ElementNode
)
get_resname()
(in
Residue
)
group_names()
(in
ParseRecords
)
get()
(in
NCBIDictionary
)
get_resname_list()
(in
Fragment
)
group_names()
(in
PassThrough
)
get()
(in
DictLookup
)
get_result()
(in
ApplicationResult
)
GroupNames
(in
Martel.convert_re
)
get()
(in
ExPASyDictionary
)
get_result()
(in
Async
)
GroupRef
(in
Martel.Expression
)
get()
(in
ExPASyDictionary
)
get_rms()
(in
SVDSuperimposer
)
GROUPREF
(in
Martel.msre_constants
)
get()
(in
Dictionary
)
get_rotran()
(in
SVDSuperimposer
)
GROUPREF
(in
Martel.msre_parse
)
get()
(in
RestrictionBatch
)
get_segid()
(in
Residue
)
GROUPREF_IGNORE
(in
Martel.msre_constants
)
get()
(in
DictionaryBuilder
)
get_segment_info()
(in
ChromosomeCounts
)
GROUPREF_IGNORE
(in
Martel.msre_parse
)
get()
(in
MissingTable
)
get_seq()
(in
PSEA
)
groups()
(in
PrositeMatch
)
get()
(in
ExPASyDictionary
)
get_Seq_by_acc()
(in
BioSeqDatabase
)
guess_gaps()
(in
Immune
)
get()
(in
DBGroup
)
get_Seq_by_id()
(in
BioSeqDatabase
)
Trees
Indices
Help
Generated by Epydoc 3.0.1 on Mon Sep 15 09:24:35 2008
http://epydoc.sourceforge.net