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Utilities for working with FASTA-formatted sequences.
This module uses Martel-based parsing to speed up the parsing process.
Classes: Record Holds FASTA sequence data. Iterator Iterates over sequence data in a FASTA file. Dictionary Accesses a FASTA file using a dictionary interface. RecordParser Parses FASTA sequence data into a Record object. SequenceParser Parses FASTA sequence data into a Sequence object.
Functions: index_file Index a FASTA file for a Dictionary.
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Record Holds information from a FASTA record. |
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Iterator Returns one record at a time from a FASTA file. |
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RecordParser Parses FASTA sequence data into a Fasta.Record object. |
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SequenceParser Parses FASTA sequence data into a SeqRecord object. |
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