Package Bio :: Package SeqIO :: Module StockholmIO
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Module StockholmIO

source code

Bio.SeqIO support for the "stockholm" (aka PFAM) file format.

You were expected to use this module via the Bio.SeqIO functions. This module has now been replaced by Bio.AlignIO.PhylipIO, and is deprecated.

Classes [hide private]
  StockholmIterator
Loads a Stockholm file from PFAM into SeqRecord objects.
  StockholmWriter
Class to write PFAM style Stockholm format files.
Variables [hide private]
  __warningregistry__ = {('Bio.SeqIO.StockholmIO is deprecated. ...
Variables Details [hide private]

__warningregistry__

Value:
{('Bio.SeqIO.StockholmIO is deprecated.  You can continue to read and \
write \'clustal\' files with Bio.SeqIO, but this is now handled via Bi\
o.AlignIO internally.',
  <type 'exceptions.DeprecationWarning'>,
  17): 1}