Package Bio :: Package SeqIO :: Module NexusIO
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Module NexusIO

source code

Bio.SeqIO support for the "nexus" file format.

You were expected to use this module via the Bio.SeqIO functions. This module has now been replaced by Bio.AlignIO.NexusIO, and is deprecated.

Functions [hide private]
 
NexusIterator(handle)
Returns SeqRecord objects from a Nexus file.
source code
Variables [hide private]
  __warningregistry__ = {('Bio.SeqIO.NexusIO is deprecated. You...
Function Details [hide private]

NexusIterator(handle)

source code 

Returns SeqRecord objects from a Nexus file.

Thus uses the Bio.Nexus module to do the hard work.


Variables Details [hide private]

__warningregistry__

Value:
{('Bio.SeqIO.NexusIO is deprecated.  You can continue to read \'nexus\\
' files with Bio.SeqIO, but this is now handled via Bio.AlignIO intern\
ally.',
  <type 'exceptions.DeprecationWarning'>,
  16): 1}