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Calculate a fitness giving weight to schemas that match many times.
This fitness function tries to maximize schemas which are found many times in a group of sequences.
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Initialize with sequences to evaluate. Arguments: o seq_records -- A set of SeqRecord objects which we use to calculate the fitness. o schema_evaluator - An Schema class which can be used to evaluate find motif matches in sequences. |
Calculate the fitness of a genome based on schema matches. This bases the fitness of a genome completely on the number of times it matches in the set of seq_records. Matching more times gives a better fitness |
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Generated by Epydoc 3.0.1 on Mon Sep 15 09:24:58 2008 | http://epydoc.sourceforge.net |