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Convert a serie of Rebase files into a Restriction_Dictionary.py module. The Rebase files are in the emboss format : emboss_e.### -> contains informations about the restriction sites. emboss_r.### -> contains general informations about the enzymes. emboss_s.### -> contains informations about the suppliers. ### is a 3 digit number. The first digit is the year and the two last the month.
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OverhangError Exception for dealing with overhang. |
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newenzyme construct the attributes of the enzyme corresponding to 'name'. |
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TypeCompiler Build the different types possible for Restriction Enzymes |
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DictionaryBuilder |
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string |
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string |
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string |
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bool |
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string |
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DNA = Seq
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dna_alphabet = {'A': 'A', 'C': 'C', 'G': 'G', 'T': 'T', 'R': '
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complement_alphabet = {'A': 'T', 'T': 'A', 'C': 'G', 'G': 'C',
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enzymedict = {}
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suppliersdict = {}
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classdict = {}
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typedict = {}
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start = '
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given a degenerated base, returns its meaning in IUPAC alphabet. i.e: b= 'A' -> 'A' b= 'N' -> 'ACGT' etc...
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Construct a regular expression from a DNA sequence. i.e. : site = 'ABCGN' -> 'A[CGT]CG.'
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True is the sequence is a palindrom. sequence is a DNA object.
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dna_alphabet
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complement_alphabet
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start
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