Package Bio :: Package Data :: Module CodonTable
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Module CodonTable

source code

Classes [hide private]
  TranslationError
  CodonTable
  NCBICodonTable
  NCBICodonTableDNA
  NCBICodonTableRNA
  AmbiguousCodonTable
  AmbiguousForwardTable
Functions [hide private]
 
make_back_table(table, default_stop_codon) source code
 
register_ncbi_table(name, alt_name, id, table, start_codons, stop_codons) source code
 
list_possible_proteins(codon, forward_table, ambiguous_nucleotide_values) source code
 
list_ambiguous_codons(codons) source code
Variables [hide private]
  unambiguous_dna_by_name = {}
  unambiguous_dna_by_id = {}
  unambiguous_rna_by_name = {}
  unambiguous_rna_by_id = {}
  generic_by_name = {}
  generic_by_id = {}
  ambiguous_generic_by_name = {}
  ambiguous_generic_by_id = {}
  standard_dna_table = None
  standard_rna_table = None
  ambiguous_dna_by_name = {}
  ambiguous_dna_by_id = {}
  ambiguous_rna_by_name = {}
  ambiguous_rna_by_id = {}
  id = 15