Package Bio :: Package formatdefs :: Module genbank
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Source Code for Module Bio.formatdefs.genbank

 1  from Bio.config.FormatRegistry import FormatObject, FormatGroup 
 2   
 3   
 4  # This is a sequence of genbank records 
 5  genbank_records = FormatObject( 
 6      name = "genbank-records", 
 7      abbrev = "genbank_records", 
 8      expression = "Bio.expressions.genbank.format", 
 9      ) 
10   
11  # This is the format as released by NCBI.  It includes 
12  # the header information. 
13  genbank_release = FormatObject( 
14      name = "genbank-release", 
15      abbrev = "genbank_release", 
16      expression = "Bio.expressions.genbank.ncbi_format", 
17      ) 
18   
19   
20  genbank = FormatGroup( 
21      name = "genbank", 
22      ) 
23  genbank.add(genbank_records) 
24  genbank.add(genbank_release) 
25   
26  from Bio.formatdefs import sequence 
27  sequence.sequence.add(genbank) 
28