Package Bio :: Package Fasta
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Package Fasta

source code

Utilities for working with FASTA-formatted sequences.

This module uses Martel-based parsing to speed up the parsing process.

Classes: Record Holds FASTA sequence data. Iterator Iterates over sequence data in a FASTA file. Dictionary Accesses a FASTA file using a dictionary interface. RecordParser Parses FASTA sequence data into a Record object. SequenceParser Parses FASTA sequence data into a Sequence object.

Functions: index_file Index a FASTA file for a Dictionary.

Submodules [hide private]

Classes [hide private]
  Record
Holds information from a FASTA record.
  Iterator
Returns one record at a time from a FASTA file.
  RecordParser
Parses FASTA sequence data into a Fasta.Record object.
  SequenceParser
Parses FASTA sequence data into a SeqRecord object.