Package Bio :: Package IntelliGenetics
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Package IntelliGenetics

source code

Parser for the MASE/IntelliGenetics alignment file format (DEPRECATED).

Please use Bio.SeqIO with the "ig" format instead.

Submodules [hide private]

Classes [hide private]
  Iterator
Iterator interface to move over a file of IntelliGenetics entries one at a time.
  _Scanner
Start up Martel to do the scanning of the file.
  _RecordConsumer
Create an IntelliGenetics Record object from scanner generated information.
  RecordParser
Parse IntelliGenetics files into Record objects
  IntelliGeneticsReader
Variables [hide private]
  __warningregistry__ = {('Bio.IntelliGenetics is deprecated. We...
Variables Details [hide private]

__warningregistry__

Value:
{('Bio.IntelliGenetics is deprecated. We hope the new \'ig\' format su\
pport in Bio.SeqIO will be suitable for most users.  Please get in tou\
ch on the  mailing lists if this (or its removal) causes any problems \
for you.',
  <type 'exceptions.DeprecationWarning'>,
  15): 1}