Package Bio :: Module EZRetrieve
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Module EZRetrieve

source code

This module contains code to access EZRetrieve (OBSOLETE).

This is a very simple interface to the EZRetrieve website described in:

Zhang, H., Ramanathan, Y., Soteropoulos, P., Recce, M., and Tolias, P.P. (2002). EZ-Retrieve: A web-server for batch retrieval of coordinate-specified human DNA sequences and underscoring putative transcription factor-binding sites. Nucl. Acids. Res. 2002 30: e121. http://dx.doi.org/10.1093/nar/gnf120

Functions: retrieve_single Retrieve a single sequence from EZRetrieve. parse_single Parse the results from EZRetrieve into FASTA format.

This module is now considered to be obsolete, and is likely to be deprecated in a future release of Biopython, and later removed.

Functions [hide private]
 
retrieve_single(id, from_, to, retrieve_by=None, organism=None, parse_results=1) source code
 
parse_single(handle)
Return a FASTA-formatted string for the sequence.
source code
Function Details [hide private]

parse_single(handle)

source code 

Return a FASTA-formatted string for the sequence. May raise an AssertionError if there was a problem retrieving the sequence.