Package Bio :: Package Sequencing :: Module Phd :: Class _Scanner
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Class _Scanner

source code

Scans a PHD-formatted file (DEPRECATED).

Methods: feed - Feed one PHD record.

Instance Methods [hide private]
 
feed(self, handle, consumer)
Reads in PDH data from the handle for scanning.
source code
 
_scan_record(self, uhandle, consumer) source code
 
_scan_begin_sequence(self, uhandle, consumer) source code
 
_scan_comments(self, uhandle, consumer) source code
 
_scan_dna(self, uhandle, consumer) source code
Method Details [hide private]

feed(self, handle, consumer)

source code 

Reads in PDH data from the handle for scanning.

Feed in PHD data for scanning. handle is a file-like object containing PHD data. consumer is a Consumer object that will receive events as the PHD data is scanned.