Package Bio :: Package Fasta :: Module FastaAlign
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Module FastaAlign

source code

Code to deal with alignments written in Fasta format (OBSOLETE).

This module is considered obsolete and likely to be deprecated. Please use Bio.AlignIO instead for reading and writing alignments in FASTA format.

This mostly just uses the regular Fasta parsing stuff written by Jeff to deal with all of the input and output formats.

functions: o parse_file()

classes: FastaAlignment

Classes [hide private]
  FastaAlignment
Work with the Fasta Alignment format.
Functions [hide private]
 
parse_file(file_name, type='DNA')
Parse the given file into a FastaAlignment object.
source code
Function Details [hide private]

parse_file(file_name, type='DNA')

source code 

Parse the given file into a FastaAlignment object.

Arguments: o file_name - The location of the file to parse. o type - The type of information contained in the file.