Package Bio :: Package FSSP
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Package Bio.FSSP

Submodules

Classes
FSSPAlignDict  
FSSPAlignRec  
FSSPHeader  
FSSPSumDict  
FSSPSumRec Contains info from an FSSP summary record
PosAlign  

Function Summary
  read_fssp(fssp_handle)

Variable Summary
SRE_Pattern alignments_rec =  *[0-9]+ +-?[0-9]+
SRE_Pattern alignments_title = ## +ALIGNMENTS
SRE_Pattern equiv_title = ## +EQUIVALENCES
dict header_records = {'source': <_sre.SRE_Pattern object at ...
SRE_Pattern summary_rec =  *[0-9]++[1-9][0-9a-z]{3}
SRE_Pattern summary_title = ## +SUMMARY

Variable Details

alignments_rec

Type:
SRE_Pattern
Value:
 *[0-9]+ +-?[0-9]+                                                     

alignments_title

Type:
SRE_Pattern
Value:
## +ALIGNMENTS                                                         

equiv_title

Type:
SRE_Pattern
Value:
## +EQUIVALENCES                                                       

header_records

Type:
dict
Value:
{'author': <_sre.SRE_Pattern object at 0xb789f5f8>,
 'compnd': <_sre.SRE_Pattern object at 0xb789f548>,
 'database': <_sre.SRE_Pattern object at 0xb7801b60>,
 'header': <_sre.SRE_Pattern object at 0xb789f2e0>,
 'nalign': <_sre.SRE_Pattern object at 0xb789f6a8>,
 'pdbid': <_sre.SRE_Pattern object at 0xb778b7f0>,
 'seqlength': <_sre.SRE_Pattern object at 0xb7801860>,
 'source': <_sre.SRE_Pattern object at 0xb789f650>}                    

summary_rec

Type:
SRE_Pattern
Value:
 *[0-9]+: +[1-9][0-9a-z]{3}                                            

summary_title

Type:
SRE_Pattern
Value:
## +SUMMARY                                                            

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