Package Bio :: Package expressions :: Package blast :: Module ncbiblast
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Module Bio.expressions.blast.ncbiblast

Function Summary
  float_param(name)
  float_stat(name)
  int_param(name, signed, comma)
  int_stat(name, signed, comma)
  Number(name, attrs)
  _bit_info(s, name)
  _num_stat(name, signed, comma)
  _nv(s, expr)

Variable Summary
Seq a_info = <Martel.Expression.Seq instance at 0xb7146f6c>
Group alignment = <Martel.Expression.Group instance at 0xb716e...
Alt blast_filter = <Martel.Expression.Alt instance at 0xb710...
Group blastn = <Martel.Expression.Group instance at 0xb71231ac...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0xb71...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identical = <Martel.Expression.Seq instance at 0x...
Group blastp = <Martel.Expression.Group instance at 0xb7130ecc...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0xb71...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_identical = <Martel.Expression.Seq instance at 0x...
Group blastx = <Martel.Expression.Group instance at 0xb70d3c0c...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0xb71...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq db_stats = <Martel.Expression.Seq instance at 0xb716e6ac...
Group expect = <Martel.Expression.Group instance at 0xb715a78c...
Group format = <Martel.Expression.Group instance at 0xb71152cc...
Seq frame = <Martel.Expression.Seq instance at 0xb71674ec>
Seq frameshift_info = <Martel.Expression.Seq instance at 0xb...
Seq gap_penalties_stats = <Martel.Expression.Seq instance at...
Seq gapped_lambda_stats = <Martel.Expression.Seq instance at...
Seq generic_info1 = <Martel.Expression.Seq instance at 0xb71...
Seq generic_info2 = <Martel.Expression.Seq instance at 0xb71...
Group header = <Martel.Expression.Group instance at 0xb715a20c...
Group hit = <Martel.Expression.Group instance at 0xb716e40c>
Seq hit_descr = <Martel.Expression.Seq instance at 0xb715a70...
Seq hit_length = <Martel.Expression.Seq instance at 0xb715a3...
Seq homology_line = <Martel.Expression.Seq instance at 0xb71...
Group hsp = <Martel.Expression.Group instance at 0xb716e3cc>
Seq hsp_info = <Martel.Expression.Seq instance at 0xb714658c...
Group hsp_length = <Martel.Expression.Group instance at 0xb715...
Seq lambda_stats = <Martel.Expression.Seq instance at 0xb717...
Seq matrix_stats = <Martel.Expression.Seq instance at 0xb717...
Group ncbi_version = <Martel.Expression.Group instance at 0xb7...
Group num_bits = <Martel.Expression.Group instance at 0xb715a7...
Group num_identical = <Martel.Expression.Group instance at 0xb...
Group num_positives = <Martel.Expression.Group instance at 0xb...
Seq query_database = <Martel.Expression.Seq instance at 0xb7...
Group query_descr = <Martel.Expression.Group instance at 0xb71...
Seq query_letters = <Martel.Expression.Seq instance at 0xb71...
Seq query_line = <Martel.Expression.Seq instance at 0xb7167d...
Seq s1_info = <Martel.Expression.Seq instance at 0xb718964c>
Seq s2_info = <Martel.Expression.Seq instance at 0xb7189d0c>
Seq score = <Martel.Expression.Seq instance at 0xb71601ec>
Seq spaces_line = <Martel.Expression.Seq instance at 0xb710f...
Seq strand = <Martel.Expression.Seq instance at 0xb7167a0c>
Seq subject_line = <Martel.Expression.Seq instance at 0xb716...
Seq t_info = <Martel.Expression.Seq instance at 0xb7146acc>
Group table = <Martel.Expression.Group instance at 0xb715272c>
Group table_entry = <Martel.Expression.Group instance at 0xb71...
Group tblastn = <Martel.Expression.Group instance at 0xb70e394...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_ending = <Martel.Expression.Seq instance at 0xb7...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0xb71...
Group tblastx = <Martel.Expression.Group instance at 0xb70f368...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastx_ending = <Martel.Expression.Seq instance at 0xb7...
Seq tblastx_frame = <Martel.Expression.Seq instance at 0xb71...
Seq tblastx_hsp_header = <Martel.Expression.Seq instance at ...
Group to_table = <Martel.Expression.Group instance at 0xb71523...
Seq ungapped_lambda_stats = <Martel.Expression.Seq instance ...
Seq x1_info = <Martel.Expression.Seq instance at 0xb71821ec>
Seq x2_info = <Martel.Expression.Seq instance at 0xb71828ac>
Seq x3_info = <Martel.Expression.Seq instance at 0xb7182fac>
Seq _comma_digits = <Martel.Expression.Seq instance at 0xb71...

Variable Details

a_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7146f6c>                         

alignment

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb716e2cc>                       

blast_filter

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0xb710c62c>                         

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71231ac>                       

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71c1b8c>                         

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7189d4c>                         

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716e22c>                         

blastn_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716090c>                         

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7130ecc>                       

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71c1f8c>                         

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7189d6c>                         

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716e24c>                         

blastp_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb715a60c>                         

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb70d3c0c>                       

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71c1c8c>                         

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7189dcc>                         

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716e12c>                         

db_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716e6ac>                         

expect

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb715a78c>                       

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71152cc>                       

frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71674ec>                         

frameshift_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb714698c>                         

gap_penalties_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7178a6c>                         

gapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71729ac>                         

generic_info1

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7178bcc>                         

generic_info2

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71462ec>                         

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb715a20c>                       

hit

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb716e40c>                       

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb715a70c>                         

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb715a34c>                         

homology_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7167e8c>                         

hsp

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb716e3cc>                       

hsp_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb714658c>                         

hsp_length

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb715a88c>                       

lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71723cc>                         

matrix_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71783ac>                         

ncbi_version

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb710c86c>                       

num_bits

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb715a74c>                       

num_identical

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb715a80c>                       

num_positives

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb715a8ec>                       

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710efcc>                         

query_descr

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb710e94c>                       

query_letters

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710e90c>                         

query_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7167d2c>                         

s1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb718964c>                         

s2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7189d0c>                         

score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71601ec>                         

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710f62c>                         

strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7167a0c>                         

subject_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716e16c>                         

t_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7146acc>                         

table

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb715272c>                       

table_entry

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb715270c>                       

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb70e394c>                       

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710e62c>                         

tblastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7189dcc>                         

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716e26c>                         

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71603cc>                         

tblastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb70f368c>                       

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710e74c>                         

tblastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7189d8c>                         

tblastx_frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716760c>                         

tblastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716e2ac>                         

to_table

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb715238c>                       

ungapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716e9ac>                         

x1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71821ec>                         

x2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71828ac>                         

x3_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7182fac>                         

_comma_digits

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710ebcc>                         

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