Package Martel :: Package test :: Package testformats :: Module swissprot38
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Module Martel.test.testformats.swissprot38

Parser for the SWISS-PROT 38 format.

You probably want to use the variables 'record' (for a single record) and 'format' (for a set of records).
Function Summary
  Simple(tag, tag_data)

Variable Summary
Group AC = <Martel.Expression.Group instance at 0xb6e1e32c>
Group AC_block = <Martel.Expression.Group instance at 0xb6e7a4...
Group bogus_DR_group = <Martel.Expression.Group instance at 0x...
Group CC = <Martel.Expression.Group instance at 0xb6e6d76c>
Group CC_begin = <Martel.Expression.Group instance at 0xb6e6d5...
Group CC_copyright = <Martel.Expression.Group instance at 0xb6...
Group CC_copyright_begin = <Martel.Expression.Group instance a...
Group CC_copyright_end = <Martel.Expression.Group instance at ...
Group comment = <Martel.Expression.Group instance at 0xb6e6dfc...
Group DE = <Martel.Expression.Group instance at 0xb6e6088c>
Group DE_block = <Martel.Expression.Group instance at 0xb6e641...
Group DR = <Martel.Expression.Group instance at 0xb6e775ec>
Group DR_block = <Martel.Expression.Group instance at 0xb6e791...
Seq DR_embl = <Martel.Expression.Seq instance at 0xb6e7748c>
Seq DR_general = <Martel.Expression.Seq instance at 0xb6e774...
Seq DR_prosite = <Martel.Expression.Seq instance at 0xb6e774...
Group DT_ann_update = <Martel.Expression.Group instance at 0xb...
Group DT_created = <Martel.Expression.Group instance at 0xb6e0...
Group DT_seq_update = <Martel.Expression.Group instance at 0xb...
Group end = <Martel.Expression.Group instance at 0xb6e0178c>
Group feature_block = <Martel.Expression.Group instance at 0xb...
ParseRecords format = <Martel.Expression.ParseRecords instance at 0xb...
Group format_expression = <Martel.Expression.Group instance at...
Group FT = <Martel.Expression.Group instance at 0xb6e79d8c>
Group FT_continuation = <Martel.Expression.Group instance at 0...
Group FT_range = <Martel.Expression.Group instance at 0xb6e793...
Group GN = <Martel.Expression.Group instance at 0xb6e6420c>
Group GN_block = <Martel.Expression.Group instance at 0xb6e643...
Group ID = <Martel.Expression.Group instance at 0xb6f808ac>
Group KW = <Martel.Expression.Group instance at 0xb6e7918c>
Group KW_block = <Martel.Expression.Group instance at 0xb6e792...
Group OC = <Martel.Expression.Group instance at 0xb6e646ec>
Group OC_block = <Martel.Expression.Group instance at 0xb6e648...
Group OG = <Martel.Expression.Group instance at 0xb6e6454c>
Group OG_block = <Martel.Expression.Group instance at 0xb6e646...
Group OS = <Martel.Expression.Group instance at 0xb6e643ac>
Group OS_block = <Martel.Expression.Group instance at 0xb6e644...
Group RA = <Martel.Expression.Group instance at 0xb6e6d02c>
Group RA_block = <Martel.Expression.Group instance at 0xb6e6d1...
Group RC = <Martel.Expression.Group instance at 0xb6e64bac>
Group RC_block = <Martel.Expression.Group instance at 0xb6e64c...
Group record = <Martel.Expression.Group instance at 0xb6e0192c...
Group reference = <Martel.Expression.Group instance at 0xb6e6d...
Group RL = <Martel.Expression.Group instance at 0xb6e6d32c>
Group RL_block = <Martel.Expression.Group instance at 0xb6e6d4...
Group RN = <Martel.Expression.Group instance at 0xb6e6488c>
Group RP = <Martel.Expression.Group instance at 0xb6e64a6c>
Group RT = <Martel.Expression.Group instance at 0xb6e6d18c>
Group RT_block = <Martel.Expression.Group instance at 0xb6e6d2...
Group RX = <Martel.Expression.Group instance at 0xb6e64d4c>
Group sequence = <Martel.Expression.Group instance at 0xb6e016...
Group single_comment = <Martel.Expression.Group instance at 0x...
Group SQ = <Martel.Expression.Group instance at 0xb6e79e6c>
Group SQ_data = <Martel.Expression.Group instance at 0xb6e79ea...

Variable Details

AC

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e1e32c>                       

AC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e7a4cc>                       

bogus_DR_group

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6df4c>                       

CC

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d76c>                       

CC_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d54c>                       

CC_copyright

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6dbcc>                       

CC_copyright_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6da4c>                       

CC_copyright_end

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6ddec>                       

comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6dfcc>                       

DE

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6088c>                       

DE_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6418c>                       

DR

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e775ec>                       

DR_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e7910c>                       

DR_embl

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6e7748c>                         

DR_general

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6e774ac>                         

DR_prosite

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6e774ec>                         

DT_ann_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e0f5ac>                       

DT_created

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e0f32c>                       

DT_seq_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e0f9ec>                       

end

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e0178c>                       

feature_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e79dec>                       

format

Type:
ParseRecords
Value:
<Martel.Expression.ParseRecords instance at 0xb6e019ec>                

format_expression

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e019ac>                       

FT

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e79d8c>                       

FT_continuation

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e793cc>                       

FT_range

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e7932c>                       

GN

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6420c>                       

GN_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6432c>                       

ID

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6f808ac>                       

KW

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e7918c>                       

KW_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e792ac>                       

OC

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e646ec>                       

OC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6480c>                       

OG

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6454c>                       

OG_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6466c>                       

OS

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e643ac>                       

OS_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e644cc>                       

RA

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d02c>                       

RA_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d10c>                       

RC

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e64bac>                       

RC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e64ccc>                       

record

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e0192c>                       

reference

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d50c>                       

RL

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d32c>                       

RL_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d44c>                       

RN

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6488c>                       

RP

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e64a6c>                       

RT

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d18c>                       

RT_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d2ac>                       

RX

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e64d4c>                       

sequence

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e016ec>                       

single_comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e6d9cc>                       

SQ

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e79e6c>                       

SQ_data

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e79eac>                       

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