Package Bio :: Package MEME :: Module Motif :: Class Motif
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Class Motif

Known Subclasses:
MEMEMotif

A generic motif class.

A Motif has information about the alphabet used in the motif, the length of the motif, the motif name, the number of occurrences, and the individual instances of the motif. Each of the instances is an object of the Instance class.

Methods: add_instance(instance): adds a new instance of the motif. get_instance_by_name(name): returns an instance with the specified name.
Method Summary
  __init__(self)
  add_instance(self, instance)
  get_instance_by_name(self, name)
  make_consensus(self, minimum_frequency)
  make_pssm(self)

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