Trees | Index | Help |
---|
Package Bio :: Package WWW :: Module ExPASy |
|
This module provides code to access resources at ExPASy over the WWW. http://www.expasy.ch/
Functions: get_prodoc_entry Interface to the get-prodoc-entry CGI script. get_prosite_entry Interface to the get-prosite-entry CGI script. get_sprot_raw Interface to the get-sprot-raw.pl CGI script. sprot_search_ful Interface to the sprot-search-ful CGI script. sprot_search_de Interface to the sprot-search-de CGI script. _openFunction Summary | |
---|---|
get_prodoc_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prodoc-entry') -> handle | |
get_prosite_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-entry') -> handle | |
get_sprot_raw(id, cgi='http://www.expasy.ch/cgi-bin/get-sprot-raw.pl') -> handle | |
scanprosite1(seq=None, id=None, exclude_frequent=None, cgi='http://expasy.cbr.nrc.ca/cgi-bin/scanprosite/scanprosite?1') -> handle | |
sprot_search_de(text, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-de') -> handle | |
sprot_search_ful(text, make_wild=None, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-ful') -> handle | |
_open(cgi, params={}, get=1) -> UndoHandle |
Function Details |
---|
get_prodoc_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prodoc-entry')get_prodoc_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prodoc-entry') -> handle Get a handle to a PRODOC entry at ExPASy. |
get_prosite_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-entry')get_prosite_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-entry') -> handle Get a handle to a PROSITE entry at ExPASy. |
get_sprot_raw(id, cgi='http://www.expasy.ch/cgi-bin/get-sprot-raw.pl')get_sprot_raw(id, cgi='http://www.expasy.ch/cgi-bin/get-sprot-raw.pl') -> handle Get a handle to a raw SwissProt entry at ExPASy. |
scanprosite1(seq=None, id=None, exclude_frequent=None, cgi='http://expasy.cbr.nrc.ca/cgi-bin/scanprosite/scanprosite?1')scanprosite1(seq=None, id=None, exclude_frequent=None, cgi='http://expasy.cbr.nrc.ca/cgi-bin/scanprosite/scanprosite?1') -> handle Scan a sequence for a Prosite pattern. Either a sequence or a SwissProt/ trEMBL sequence can be passed. exclude_frequent specifies whether to exclude patterns with high probability. |
sprot_search_de(text, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-de')sprot_search_de(text, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-de') -> handle Search SwissProt by name, description, gene name, species, or organelle. |
sprot_search_ful(text, make_wild=None, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-ful')sprot_search_ful(text, make_wild=None, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-ful') -> handle Search SwissProt by full text. |
_open(cgi, params={}, get=1)_open(cgi, params={}, get=1) -> UndoHandle Open a handle to ExPASy. cgi is the URL for the cgi script to access. params is a dictionary with the options to pass to it. get is a boolean that describes whether a GET should be used. Does some simple error checking, and will raise an IOError if it encounters one. |
Trees | Index | Help |
---|
Generated by Epydoc 2.1 on Thu Aug 10 20:01:09 2006 | http://epydoc.sf.net |