Package Bio :: Package Medline :: Module nlmmedline_031101_format
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Module Bio.Medline.nlmmedline_031101_format

nlmmedline_xml_format.py

A Martel format to parse the NLM's XML format for Medline.

http://www.nlm.nih.gov/databases/dtd/nlmmedline_031101.dtd http://www.nlm.nih.gov/databases/dtd/nlmmedlinecitation_031101.dtd http://www.nlm.nih.gov/databases/dtd/nlmcommon_031101.dtd

Formats: citation_format Format for one MedlineCitation. format Format for a whole file.
Function Summary
  group_elem(element, expr, *attrs)
  simple_elem(element, *attrs)
simple_elem(element, *attrs)
  _end_elem(element)
  _start_elem(element, *attrs)

Variable Summary
Alt author_name = <Martel.Expression.Alt instance at 0xb725f...
Group citation_format = <Martel.Expression.Group instance at 0...
Seq DeleteCitation_end = <Martel.Expression.Seq instance at ...
Seq DeleteCitation_start = <Martel.Expression.Seq instance a...
Seq doctype = <Martel.Expression.Seq instance at 0xb721cbec>
Seq DOCTYPE = <Martel.Expression.Seq instance at 0xb721cc6c>
list elements = ['Year', 'Month', 'Day', 'Season', 'MedlineDa...
Seq footer_format = <Martel.Expression.Seq instance at 0xb72...
HeaderFooter format = <Martel.Expression.HeaderFooter instance at 0xb...
Group header_format = <Martel.Expression.Group instance at 0xb...
Alt imprint_type = <Martel.Expression.Alt instance at 0xb725...
Alt indexing_status = <Martel.Expression.Alt instance at 0xb...
Seq MedlineCitationSet_end = <Martel.Expression.Seq instance...
Seq normal_date = <Martel.Expression.Seq instance at 0xb725f...
MaxRepeat OSpaces = <Martel.Expression.MaxRepeat instance at 0xb72...
Seq personal_name = <Martel.Expression.Seq instance at 0xb72...
Alt pub_date = <Martel.Expression.Alt instance at 0xb725fc8c...
Seq pubmed_query_format = <Martel.Expression.Seq instance at...
Seq Ref_template = <Martel.Expression.Seq instance at 0xb728...
Any space = <Martel.Expression.Any instance at 0xb721750c>
Seq xml_version = <Martel.Expression.Seq instance at 0xb721c...

Function Details

simple_elem(element, *attrs)

simple_elem(element, *attrs)

Create a Martel Expression in this module's namespace that will recognize an XML element in the form of: <element>data</element>

The whole element must be on a single line. The Expression will be created in the module's namespace with the same name as the element.

Variable Details

author_name

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0xb725f04c>                         

citation_format

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb721790c>                       

DeleteCitation_end

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7217a6c>                         

DeleteCitation_start

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb72179ec>                         

doctype

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb721cbec>                         

DOCTYPE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb721cc6c>                         

elements

Type:
list
Value:
['Year', 'Month', 'Day', 'Season', 'MedlineDate', 'Hour', 'Minute', 'S\
econd']                                                                

footer_format

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb721cd6c>                         

format

Type:
HeaderFooter
Value:
<Martel.Expression.HeaderFooter instance at 0xb721cd8c>                

header_format

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb721cd0c>                       

imprint_type

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0xb725f0cc>                         

indexing_status

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0xb725f1ac>                         

MedlineCitationSet_end

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7217acc>                         

normal_date

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb725fbec>                         

OSpaces

Type:
MaxRepeat
Value:
<Martel.Expression.MaxRepeat instance at 0xb72cd3cc>                   

personal_name

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb725f06c>                         

pub_date

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0xb725fc8c>                         

pubmed_query_format

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb721cc2c>                         

Ref_template

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb728104c>                         

space

Type:
Any
Value:
<Martel.Expression.Any instance at 0xb721750c>                         

xml_version

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb721cb8c>                         

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