Package Bio :: Package expressions :: Package blast :: Module wublast
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Module Bio.expressions.blast.wublast

Function Summary
  main(outf)

Variable Summary
Group blastn = <Martel.Expression.Group instance at 0xb7014e6c...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0xb70...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identities = <Martel.Expression.Seq instance at 0...
Seq blastn_score = <Martel.Expression.Seq instance at 0xb710...
Seq blastn_strand = <Martel.Expression.Seq instance at 0xb71...
Group blastp = <Martel.Expression.Group instance at 0xb707242c...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0xb70...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_score = <Martel.Expression.Seq instance at 0xb710...
Group blastx = <Martel.Expression.Group instance at 0xb7038f0c...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0xb70...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastx_identities = <Martel.Expression.Seq instance at 0...
Seq blastx_score = <Martel.Expression.Seq instance at 0xb710...
Seq blastx_strand = <Martel.Expression.Seq instance at 0xb71...
Seq blastx_table_entry = <Martel.Expression.Seq instance at ...
Seq blastx_to_database = <Martel.Expression.Seq instance at ...
Seq ending = <Martel.Expression.Seq instance at 0xb70aa74c>
Seq ending_start = <Martel.Expression.Seq instance at 0xb709...
Group format = <Martel.Expression.Group instance at 0xb70bb54c...
Group header = <Martel.Expression.Group instance at 0xb710766c...
Seq hit_descr = <Martel.Expression.Seq instance at 0xb715a70...
Seq hit_length = <Martel.Expression.Seq instance at 0xb715a3...
Seq identities = <Martel.Expression.Seq instance at 0xb7107e...
MaxRepeat parameters = <Martel.Expression.MaxRepeat instance at 0x...
Seq query_database = <Martel.Expression.Seq instance at 0xb7...
Seq spaces_line = <Martel.Expression.Seq instance at 0xb710f...
Seq statistics = <Martel.Expression.Seq instance at 0xb70aa7...
Seq table_entry = <Martel.Expression.Seq instance at 0xb709d...
Group tblastn = <Martel.Expression.Group instance at 0xb6fdd46...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_identities = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0xb71...
Seq tblastn_strand = <Martel.Expression.Seq instance at 0xb7...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq timestamp = <Martel.Expression.Seq instance at 0xb70a49a...
Seq to_table = <Martel.Expression.Seq instance at 0xb709db2c...
Seq wublast_version = <Martel.Expression.Seq instance at 0xb...

Variable Details

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7014e6c>                       

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710cf4c>                         

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70aa78c>                         

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb708d84c>                         

blastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb708d80c>                         

blastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7102c0c>                         

blastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7107ecc>                         

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb707242c>                       

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70a0c0c>                         

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70aa76c>                         

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710724c>                         

blastp_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7102c0c>                         

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7038f0c>                       

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70f37ac>                         

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70aa7ac>                         

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7091cac>                         

blastx_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7091bac>                         

blastx_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7102c0c>                         

blastx_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7107ecc>                         

blastx_table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb708dcac>                         

blastx_to_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70911cc>                         

ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70aa74c>                         

ending_start

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70978cc>                         

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb70bb54c>                       

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb710766c>                       

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb715a70c>                         

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb715a34c>                         

identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7107e8c>                         

parameters

Type:
MaxRepeat
Value:
<Martel.Expression.MaxRepeat instance at 0xb70979ac>                   

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb709da4c>                         

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710f62c>                         

statistics

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70aa72c>                         

table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb709dfcc>                         

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6fdd46c>                       

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb709d46c>                         

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb709762c>                         

tblastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70975ec>                         

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7102c0c>                         

tblastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7091cec>                         

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb709d60c>                         

timestamp

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb70a49ac>                         

to_table

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb709db2c>                         

wublast_version

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb710fecc>                         

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