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Package Bio :: Package Blast :: Module NCBIStandalone :: Class _Scanner |
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Scan BLAST output from blastall or blastpgp.
Tested with blastall and blastpgp v2.0.10, v2.0.11
Methods: feed Feed data into the scanner.Method Summary | |
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_scan_alignment_header(self,
uhandle,
consumer)
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_scan_alignments(self,
uhandle,
consumer)
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_scan_database_report(self,
uhandle,
consumer)
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_scan_descriptions(self,
uhandle,
consumer)
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_scan_header(self,
uhandle,
consumer)
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_scan_hsp(self,
uhandle,
consumer)
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_scan_hsp_alignment(self,
uhandle,
consumer)
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_scan_hsp_header(self,
uhandle,
consumer)
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_scan_masterslave_alignment(self,
uhandle,
consumer)
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_scan_one_pairwise_alignment(self,
uhandle,
consumer)
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_scan_pairwise_alignments(self,
uhandle,
consumer)
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_scan_parameters(self,
uhandle,
consumer)
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_scan_rounds(self,
uhandle,
consumer)
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S.feed(handle, consumer) |
Method Details |
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feed(self, handle, consumer)S.feed(handle, consumer) Feed in a BLAST report for scanning. handle is a file-like object that contains the BLAST report. consumer is a Consumer object that will receive events as the report is scanned. |
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